Welcome to Tomo Base

Description

This is the landing page documentation for Tomo Base. The Tomo Base (tomobase) library is a library of basic tools for scanning transmission electron tomography (STEM). It allows the reconstruction of 3D volume data using the ASTRA Toolbox. The library is designed to allow users to perform allignments, reconstructions, and post processing steps withing a Juypter Notebook. Additionally, tomobase is designed as base library with registration systems to allow for extended functionalities to be built on top of.

For source code visit Github.

Installation

To install, install PyQt5 or PySide2 to use graphical interfaces for file saving and loading. Optionally, all functions within Tomo Base can be accelerated using the cuda toolkit and CUPY. These do not have to be installed though. However, if desired install these libraries before usage.

conda install pyqt cuda-toolkit=XX.X cupy -c conda-forge
pip install .

License

This code is licensed under GNU general public license version 3.0.